Home Features All Datasets Advanced search How to cite FAQ Contact

GGF_05

tripeptide Gly-Gly-Phe, neutral, COOH and NH2 endings

From Dataset: Set of 5 small peptides containing aromatic side chain including set P26

Dataset reference: Valdes, H.; Pluháčková, K.; Pitoňák, M.; Řezáč, J. and Hobza, P. Phys. Chem. Chem. Phys., 2008, 10, 2747–2757

Optimization level: MP2/cc-pVTZ (RI (Resolution of Identity approximation))

Tags: P26, h-bond, NH2-NH


Structure:

37

O     -1.89914      0.71092      1.97891
C     -2.30783      1.09761      0.90929
O     -3.62315      1.22764      0.62164
H     -4.09329      0.96752      1.42854
C     -1.45721      1.46944     -0.27960
H     -1.73600      2.47036     -0.61106
N     -0.07803      1.48545      0.12600
H      0.21232      0.82220      0.83792
C      0.82124      2.20910     -0.58936
O      0.50465      2.93805     -1.52259
C      2.27574      2.09465     -0.14265
H      2.58535      3.06952      0.23019
H      2.87059      1.86918     -1.02375
N      2.51647      1.06861      0.84275
H      2.02789      1.15813      1.72091
C      2.71031     -0.22587      0.43932
O      3.12183     -0.53508     -0.66959
C      2.33461     -1.24130      1.50913
H      2.99769     -1.10918      2.36500
H      2.50041     -2.23445      1.09262
N      0.95664     -0.97344      1.93275
H      0.30919     -1.44469      1.30774
H      0.78001     -1.34330      2.85713
C     -1.70147      0.49325     -1.45500
H     -2.76525      0.48869     -1.69126
H     -1.16051      0.89687     -2.31008
C     -1.20809     -0.88365     -1.12471
C      0.08738     -1.27116     -1.48113
H      0.71602     -0.58969     -2.03960
C      0.58224     -2.52600     -1.12831
H      1.58906     -2.79643     -1.41443
C     -0.21631     -3.40988     -0.40358
H      0.16165     -4.38606     -0.13101
C     -1.50953     -3.03365     -0.03703
H     -2.13621     -3.71759      0.51948
C     -2.00010     -1.77980     -0.39690
H     -3.00969     -1.49830     -0.12341

save structure as file..



Energies:

method counterpoise corrected remark value
CCSD(T)/CBS (cc-pVTZ to cc-pVQZ extrapolation at MP2 level, CCSD(T) correction in 6-31G* basis set) no cc-pVTZ to cc-pVQZ extrapolation at MP2 level, CCSD(T) correction in 6-31G* basis set 0.6
MP2/CBS (cc-pVTZ to cc-pVQZ extrapolation) no cc-pVTZ to cc-pVQZ extrapolation 0.31
SCS-MP2/CBS (cc-pVTZ to cc-pVQZ extrapolation, SCS scaling factors: 6/5 and 1/3) no cc-pVTZ to cc-pVQZ extrapolation, SCS scaling factors: 6/5 and 1/3 1.02
MP3/CBS (cc-pVTZ to cc-pVQZ extrapolation at MP2 level, MP3 correction in 6-31G* basis set) no cc-pVTZ to cc-pVQZ extrapolation at MP2 level, MP3 correction in 6-31G* basis set 0.92
SCC-DFTB-D no 0.64
AMBER ff99 (HF/6-31G* RESP charges) no HF/6-31G* RESP charges 6.73
AMBER ff99 (B3LYP/cc-pVTZ RESP charges) no B3LYP/cc-pVTZ RESP charges 5.29
DFT TPSS/6-311++G(3df,3pd) no 3.66
DFT-D TPSS/6-311++G(3df,3pd) no 1.88
DFT B3LYP/6-311++G(3df,3pd) no 3.85
DFT M06-2X/6-311+G(2df,2p) no -0.61
DFT BH&H/6-311++G(d,p) no 1.73
DFT-D PBE/6-311++G(3df,3pd) no 2.77