Home Features All Datasets Advanced search How to cite FAQ Contact

GFA_01

tripeptide Gly-Phe-Ala, neutral, COOH and NH2 endings

From Dataset: Set of 5 small peptides containing aromatic side chain including set P26

Dataset reference: Valdes, H.; Pluháčková, K.; Pitoňák, M.; Řezáč, J. and Hobza, P. Phys. Chem. Chem. Phys., 2008, 10, 2747–2757

Optimization level: MP2/cc-pVTZ (RI (Resolution of Identity approximation))

Tags: P26


Structure:

40

O     -1.54480     -0.50820     -3.05665
C     -0.57715     -1.23521     -3.04406
O      0.05816     -1.64892     -4.15788
H     -0.42775     -1.25613     -4.89914
C      0.04795     -1.82219     -1.80300
C     -0.24677     -3.31849     -1.71079
H      0.20216     -3.70280     -0.79882
H     -1.32210     -3.48555     -1.67678
H      0.17229     -3.84394     -2.56617
H      1.12828     -1.67387     -1.84993
N     -0.47724     -1.08967     -0.67438
H     -1.19240     -0.40717     -0.88414
C      0.25768     -0.96421      0.45349
O      1.25468     -1.64335      0.68873
C     -0.18518      0.14073      1.38971
H     -1.23498      0.39487      1.23612
N     -0.01030     -0.30594      2.74426
H      0.65808     -1.03629      2.95121
C     -0.64458      0.30524      3.76675
O     -1.43201      1.23681      3.62394
C     -0.33924     -0.27905      5.13737
H     -1.19300     -0.90329      5.40030
H     -0.32889      0.55863      5.83684
N      0.86534     -1.10526      5.13767
H      1.68773     -0.52893      5.26008
H      0.84942     -1.75496      5.91128
C      0.67535      1.39173      1.09240
H      0.32601      2.18580      1.75236
H      1.70604      1.14525      1.35106
C      0.57413      1.78856     -0.34951
C      1.53677      1.36669     -1.27259
H      2.40038      0.81539     -0.91939
C      1.39083      1.64217     -2.63093
H      2.14818      1.31511     -3.33129
C      0.27352      2.34226     -3.08415
H      0.15643      2.55695     -4.13756
C     -0.69070      2.76958     -2.17316
H     -1.55816      3.31489     -2.51898
C     -0.53922      2.49511     -0.81550
H     -1.28777      2.83094     -0.10721

save structure as file..



Energies:

method counterpoise corrected remark value
CCSD(T)/CBS (cc-pVTZ to cc-pVQZ extrapolation at MP2 level, CCSD(T) correction in 6-31G* basis set) no cc-pVTZ to cc-pVQZ extrapolation at MP2 level, CCSD(T) correction in 6-31G* basis set 0.69
MP2/CBS (cc-pVTZ to cc-pVQZ extrapolation) no cc-pVTZ to cc-pVQZ extrapolation 0.12
SCS-MP2/CBS (cc-pVTZ to cc-pVQZ extrapolation, SCS scaling factors: 6/5 and 1/3) no cc-pVTZ to cc-pVQZ extrapolation, SCS scaling factors: 6/5 and 1/3 -0.15
MP3/CBS (cc-pVTZ to cc-pVQZ extrapolation at MP2 level, MP3 correction in 6-31G* basis set) no cc-pVTZ to cc-pVQZ extrapolation at MP2 level, MP3 correction in 6-31G* basis set 0.36
SCC-DFTB-D no 1.4
AMBER ff99 (HF/6-31G* RESP charges) no HF/6-31G* RESP charges 4.19
AMBER ff99 (B3LYP/cc-pVTZ RESP charges) no B3LYP/cc-pVTZ RESP charges 1.7
DFT TPSS/6-311++G(3df,3pd) no 2.03
DFT-D TPSS/6-311++G(3df,3pd) no 1.39
DFT B3LYP/6-311++G(3df,3pd) no 1.1
DFT M06-2X/6-311+G(2df,2p) no 0.25
DFT BH&H/6-311++G(d,p) no 2.47
DFT-D PBE/6-311++G(3df,3pd) no 1.21